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      <title>fMRI Tutorials</title>
      <link>https://mri.msense.de</link>
      <description>Last 10 notes on fMRI Tutorials</description>
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    <title>5.3 Visualization and Statistical Thresholding with Nilearn</title>
    <link>https://mri.msense.de/fMRI-Tutorial/5.3-Visualization-and-Statistical-Thresholding-with-Nilearn</link>
    <guid>https://mri.msense.de/fMRI-Tutorial/5.3-Visualization-and-Statistical-Thresholding-with-Nilearn</guid>
    <description><![CDATA[ This tutorial assumes you have precomputed second-level fMRI statistical maps. ]]></description>
    <pubDate>Tue, 07 Jul 2026 08:46:21 GMT</pubDate>
  </item><item>
    <title>Tips and Tricks</title>
    <link>https://mri.msense.de/Server-and-Software/Tips-and-Tricks</link>
    <guid>https://mri.msense.de/Server-and-Software/Tips-and-Tricks</guid>
    <description><![CDATA[ A catch-all of practical pointers for working on the lab servers and the LRZ cluster. Most items are one-liners that have saved time at some point. ]]></description>
    <pubDate>Tue, 07 Jul 2026 08:16:36 GMT</pubDate>
  </item><item>
    <title>1. MRI Basics</title>
    <link>https://mri.msense.de/fMRI-Tutorial/1.-MRI-Basics</link>
    <guid>https://mri.msense.de/fMRI-Tutorial/1.-MRI-Basics</guid>
    <description><![CDATA[ Principles of Magnetic Resonance Magnetic Resonance Imaging (MRI) is based on the behavior of nuclear spins in a strong magnetic field. ]]></description>
    <pubDate>Tue, 07 Jul 2026 08:16:36 GMT</pubDate>
  </item><item>
    <title>1.1 BOLD Signals and HRF</title>
    <link>https://mri.msense.de/fMRI-Tutorial/1.1-BOLD-Signal-and-HRF</link>
    <guid>https://mri.msense.de/fMRI-Tutorial/1.1-BOLD-Signal-and-HRF</guid>
    <description><![CDATA[ Hemoglobin and the Basis of the BOLD Signal Functional MRI (fMRI) often relies on the Blood-Oxygen-Level-Dependent (BOLD) contrast mechanism to detect brain activity. ]]></description>
    <pubDate>Tue, 07 Jul 2026 08:16:36 GMT</pubDate>
  </item><item>
    <title>2.2 BIDS Structure</title>
    <link>https://mri.msense.de/fMRI-Tutorial/2.2-BIDS-Structure</link>
    <guid>https://mri.msense.de/fMRI-Tutorial/2.2-BIDS-Structure</guid>
    <description><![CDATA[ BIDS stands for the Brain Imaging Data Structure, which is a simple and intuitive way to organize and describe your data. ]]></description>
    <pubDate>Tue, 07 Jul 2026 08:16:36 GMT</pubDate>
  </item><item>
    <title>2.3 fmriPrep with Docker</title>
    <link>https://mri.msense.de/fMRI-Tutorial/2.3-fmriPrep-with-Docker</link>
    <guid>https://mri.msense.de/fMRI-Tutorial/2.3-fmriPrep-with-Docker</guid>
    <description><![CDATA[  Overview This is the preprocessing step, run after your data is organized in BIDS. ]]></description>
    <pubDate>Tue, 07 Jul 2026 08:16:36 GMT</pubDate>
  </item><item>
    <title>3.1 Experimental Design</title>
    <link>https://mri.msense.de/fMRI-Tutorial/3.1-Experimental-Design</link>
    <guid>https://mri.msense.de/fMRI-Tutorial/3.1-Experimental-Design</guid>
    <description><![CDATA[ Before any statistics, the single biggest determinant of whether an fMRI study works is its experimental design — how conditions are arranged in time. ]]></description>
    <pubDate>Tue, 07 Jul 2026 08:16:36 GMT</pubDate>
  </item><item>
    <title>3.2 General Linear Model</title>
    <link>https://mri.msense.de/fMRI-Tutorial/3.2-General-Linear-Model</link>
    <guid>https://mri.msense.de/fMRI-Tutorial/3.2-General-Linear-Model</guid>
    <description><![CDATA[ 1. ]]></description>
    <pubDate>Tue, 07 Jul 2026 08:16:36 GMT</pubDate>
  </item><item>
    <title>4.2 High-level Analysis with FSL</title>
    <link>https://mri.msense.de/fMRI-Tutorial/4.2-High-level-Analysis-with-FSL</link>
    <guid>https://mri.msense.de/fMRI-Tutorial/4.2-High-level-Analysis-with-FSL</guid>
    <description><![CDATA[ High-level analysis in FSL aggregates results from individual subjects to draw inferences about a population. ]]></description>
    <pubDate>Tue, 07 Jul 2026 08:16:36 GMT</pubDate>
  </item><item>
    <title>5.1 NiLearn fMRI Basic Analysis</title>
    <link>https://mri.msense.de/fMRI-Tutorial/5.1-NiLearn-fMRI-Basic-Analysis</link>
    <guid>https://mri.msense.de/fMRI-Tutorial/5.1-NiLearn-fMRI-Basic-Analysis</guid>
    <description><![CDATA[ Analysis Overview This tutorial implements the standard 3-level fMRI analysis hierarchy: Run-level (1st level): GLM for each individual run → COPEs and VARCOPEs Subject-level (fixed-effects): Combine runs within subjects → Fixed-effects COPEs Group-level (2nd level/random-effects): Model population ... ]]></description>
    <pubDate>Tue, 07 Jul 2026 08:16:36 GMT</pubDate>
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